Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Non-Coding RNAs


John L. Rinn1, Michael Kertesz2,5, Jordon K. Wang1,5, Sharon L Squazzo4, Xiao Xu1, Samantha A. Brugmann3, Henry Goodnough3, Jill A. Helms3, Peggy J. Farnham4, Eran Segal2, and Howard Y. Chang1


RNA Data File Columns : Chromosome number, nimblescan, sample name, probe start coordinate (HG17), probe stop coordinate (HG17), probe intensity, strand, blank, annotation
* Files can be downloaded and extension changed from .txt to .GFF to be viewed by Nimblegen software (Signal Map)
RNA Sample number according to Figure 1
Sample 1 : Chest
Sample 2 : Abdomen
Sample 3 : Umbilicus
Sample 4 : Lung
Sample 5 : Forearm
Sample 6 : Finger
Sample 7 : Pubic
Sample 8 : Foreskin
Sample 9 : Prostate
Sample 10 : Thigh
Sample 11 : Foot
Sample 12 : Foreskin siGFP
Sample 13 : Foreskin siHOTAIR

 

Chromatin Immunoprecipitation (ChIP) Data File Columns : Chromosome number, nimblescan, sample name, probe start coordinate (HG17), probe stop coordinate (HG17), probe intensity, strand, blank, annotation
* Files can be downloaded and extension changed from .txt to .GFF to be viewed by Nimblegen software (Signal Map)
Lung : H3-K27-me3
Lung : H3-K9-me3
Lung : Pol II (8WG)
Lung : H3-K4-me2
Lung : Suz12
Foot : H3-K27-me3
Foot : H3-K9-me3
Foot : Pol II (8WG)
Foot : Suz12
Foreskin : H3-K27-me3
Foreskin : Suz12
Foreskin : Pol II (8WG)
Foreskin : siGFP treated H3-K27-me3
Foreskin : siHOTAIR treated H3-K27-me3