Robustness, Scalability, and Integration of a Wound-Reponse Gene Expression Signature in Predicting Breast Cancer Survival

Howard Y. Chang, Dimitry S.A. Nuyten, Julie B. Sneddon, Trevor Hastie, Robert Tibshirani, Therese Sorlie, Hongyue Dai, Yudong He, Laura van't Veer, Harry Bartelink, Matt van de Rijn, Patrick O. Brown, Marc J. van de Vijver

Home

Paper

Supplement

Explore

Authors

Explore the Data:

Clustered gene expression data are provided in a compressed (ZIP'ed) file format, with a set of three Eisen Cluster files each (.cdt/.gtr/.atr):

Download data from Figure 1A, unsupervised hierarchical clustering of 295 breast cancer samples using 442 available CSR genes
Download NKI tumor data clustered using the intrinsic gene set

Complete raw expression data for the NKI dataset are available either as two tab-delimited text files, or as a large single file. (Note that expression values are in log10 format.):

Download NKI_Expression_data1
Download NKI_Expression_data2
Download NKI_Expression_data_complete (a concatenated version of data1 and data2, containing the entire NKI series; note, cannot be opened in Excel because of the number of columns)

Clinical data for each patient in the NKI series, and information about each centroid, are provided in Excel format:

View clinical data
View centroids

Last edited by Julie B. Sneddon on January 24, 2005